Detailed information of SNP:
|
SNP ID:
sf0610487880(Gbrowse)
Chromosome: chr06 Position: 10487880 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 56.81% | 43.19% |
| All Indica | 797 | 91.09% | 8.91% |
| All Japonica | 497 | 7.85% | 92.15% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 210 | 81.43% | 18.57% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610487880 | C->T | LOC_Os06g18020(LOC_Os06g18020.1) | INTRON |