Detailed information of SNP:
|
SNP ID:
sf0610489381(Gbrowse)
Chromosome: chr06 Position: 10489381 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 65.06% | 34.94% |
| All Indica | 794 | 40.55% | 59.45% |
| All Japonica | 494 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 28.00% | 72.00% |
| Indica II | 212 | 39.62% | 60.38% |
| Indica Intermediate | 207 | 64.25% | 35.75% |
| Temperate Japonica | 333 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610489381 | A->C | INTERGENIC | None |