Detailed information of SNP:
|
SNP ID:
sf0610491853(Gbrowse)
Chromosome: chr06 Position: 10491853 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 62.54% | 37.46% |
| All Indica | 774 | 35.79% | 64.21% |
| All Japonica | 492 | 98.78% | 1.22% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 26.74% | 73.26% |
| Indica II | 209 | 35.41% | 64.59% |
| Indica Intermediate | 191 | 53.93% | 46.07% |
| Temperate Japonica | 331 | 98.79% | 1.21% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610491853 | C->T | INTERGENIC | None |