Detailed information of SNP:
|
SNP ID:
sf0610492120(Gbrowse)
Chromosome: chr06 Position: 10492120 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 78.35% | 21.65% |
| All Indica | 791 | 94.82% | 5.18% |
| All Japonica | 495 | 60.00% | 40.00% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 374 | 96.26% | 3.74% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 204 | 88.73% | 11.27% |
| Temperate Japonica | 335 | 69.85% | 30.15% |
| Tropical Japonica | 93 | 39.78% | 60.22% |
| Japonica Intermediate | 67 | 38.81% | 61.19% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610492120 | G->A | INTERGENIC | None |