Detailed information of SNP:
|
SNP ID:
sf0610494467(Gbrowse)
Chromosome: chr06 Position: 10494467 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 93.64% | 6.36% |
| All Indica | 790 | 95.44% | 4.56% |
| All Japonica | 488 | 92.62% | 7.38% |
| Aus | 66 | 78.79% | 21.21% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 208 | 93.27% | 6.73% |
| Indica Intermediate | 208 | 92.31% | 7.69% |
| Temperate Japonica | 333 | 96.70% | 3.30% |
| Tropical Japonica | 91 | 80.22% | 19.78% |
| Japonica Intermediate | 64 | 89.06% | 10.94% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610494467 | C->G | INTERGENIC | None |