Detailed information of SNP:
|
SNP ID:
sf0610530603(Gbrowse)
Chromosome: chr06 Position: 10530603 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 81.37% | 18.63% |
| All Indica | 796 | 96.98% | 3.02% |
| All Japonica | 494 | 54.05% | 45.95% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 209 | 94.74% | 5.26% |
| Temperate Japonica | 332 | 41.57% | 58.43% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610530603 | A->G | INTERGENIC | None |