Detailed information of SNP:
|
SNP ID:
sf0610530608(Gbrowse)
Chromosome: chr06 Position: 10530608 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1358 | 60.31% | 39.69% |
| All Indica | 780 | 78.97% | 21.03% |
| All Japonica | 463 | 32.40% | 67.60% |
| Aus | 63 | 49.21% | 50.79% |
| Indica I | 370 | 80.27% | 19.73% |
| Indica II | 209 | 71.29% | 28.71% |
| Indica Intermediate | 201 | 84.58% | 15.42% |
| Temperate Japonica | 318 | 27.99% | 72.01% |
| Tropical Japonica | 86 | 34.88% | 65.12% |
| Japonica Intermediate | 59 | 52.54% | 47.46% |
| Group VI/Aromatic | 12 | 8.33% | 91.67% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610530608 | T->C | INTERGENIC | None |