Detailed information of SNP:
|
SNP ID:
sf0610531306(Gbrowse)
Chromosome: chr06 Position: 10531306 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 90.21% | 9.79% |
| All Indica | 792 | 87.25% | 12.75% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 370 | 87.57% | 12.43% |
| Indica II | 211 | 77.25% | 22.75% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610531306 | A->G | INTERGENIC | None |