Detailed information of SNP:
|
SNP ID:
sf0610531397(Gbrowse)
Chromosome: chr06 Position: 10531397 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 89.11% | 10.89% |
| All Indica | 798 | 85.09% | 14.91% |
| All Japonica | 496 | 96.77% | 3.23% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 375 | 84.00% | 16.00% |
| Indica II | 212 | 75.47% | 24.53% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 87.10% | 12.90% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610531397 | C->G | INTERGENIC | None |