Detailed information of SNP:
|
SNP ID:
sf0610531522(Gbrowse)
Chromosome: chr06 Position: 10531522 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 96.94% | 3.06% |
| All Indica | 787 | 96.06% | 3.94% |
| All Japonica | 494 | 97.98% | 2.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 363 | 92.84% | 7.16% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 89.01% | 10.99% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610531522 | A->C | INTERGENIC | None |