Detailed information of SNP:
|
SNP ID:
sf0610531673(Gbrowse)
Chromosome: chr06 Position: 10531673 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 88.83% | 11.17% |
| All Indica | 797 | 85.07% | 14.93% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 375 | 83.73% | 16.27% |
| Indica II | 211 | 75.83% | 24.17% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610531673 | C->T | INTERGENIC | None |