Detailed information of SNP:
|
SNP ID:
sf0610531948(Gbrowse)
Chromosome: chr06 Position: 10531948 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 89.12% | 10.88% |
| All Indica | 799 | 85.48% | 14.52% |
| All Japonica | 495 | 96.57% | 3.43% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 375 | 84.00% | 16.00% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 86.02% | 13.98% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610531948 | A->T | INTERGENIC | None |