Detailed information of SNP:
|
SNP ID:
sf0610538401(Gbrowse)
Chromosome: chr06 Position: 10538401 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1386 | 57.22% | 42.78% |
| All Indica | 792 | 77.53% | 22.47% |
| All Japonica | 479 | 27.14% | 72.86% |
| Aus | 63 | 34.92% | 65.08% |
| Indica I | 375 | 80.27% | 19.73% |
| Indica II | 211 | 69.67% | 30.33% |
| Indica Intermediate | 206 | 80.58% | 19.42% |
| Temperate Japonica | 327 | 20.80% | 79.20% |
| Tropical Japonica | 88 | 50.00% | 50.00% |
| Japonica Intermediate | 64 | 28.12% | 71.88% |
| Group VI/Aromatic | 13 | 46.15% | 53.85% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610538401 | A->G | LOC_Os06g18100(LOC_Os06g18100.1) | Non-Synonymous SNP |