Detailed information of SNP:
|
SNP ID:
sf0610538572(Gbrowse)
Chromosome: chr06 Position: 10538572 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 89.28% | 10.72% |
| All Indica | 798 | 85.59% | 14.41% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 84.49% | 15.51% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610538572 | G->T | LOC_Os06g18100(LOC_Os06g18100.1) | Non-Synonymous SNP |