Detailed information of SNP:
|
SNP ID:
sf0610539067(Gbrowse)
Chromosome: chr06 Position: 10539067 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 89.68% | 10.32% |
| All Indica | 787 | 85.64% | 14.36% |
| All Japonica | 496 | 96.77% | 3.23% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 83.16% | 16.84% |
| Indica II | 203 | 85.71% | 14.29% |
| Indica Intermediate | 210 | 90.00% | 10.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 87.10% | 12.90% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610539067 | C->T | LOC_Os06g18100(LOC_Os06g18100.1) | INTRON |