Detailed information of SNP:
|
SNP ID:
sf0610539786(Gbrowse)
Chromosome: chr06 Position: 10539786 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1368 | 55.26% | 44.74% |
| All Indica | 782 | 68.80% | 31.20% |
| All Japonica | 470 | 33.83% | 66.17% |
| Aus | 65 | 44.62% | 55.38% |
| Indica I | 372 | 75.27% | 24.73% |
| Indica II | 210 | 65.71% | 34.29% |
| Indica Intermediate | 200 | 60.00% | 40.00% |
| Temperate Japonica | 325 | 23.08% | 76.92% |
| Tropical Japonica | 86 | 63.95% | 36.05% |
| Japonica Intermediate | 59 | 49.15% | 50.85% |
| Group VI/Aromatic | 11 | 72.73% | 27.27% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610539786 | C->T | LOC_Os06g18100(LOC_Os06g18100.1) | Non-Synonymous SNP |