Detailed information of SNP:
|
SNP ID:
sf0610542654(Gbrowse)
Chromosome: chr06 Position: 10542654 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 91.05% | 8.95% |
| All Indica | 788 | 88.20% | 11.80% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 369 | 86.72% | 13.28% |
| Indica II | 208 | 81.25% | 18.75% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610542654 | C->A | LOC_Os06g18110(LOC_Os06g18110.1) | INTRON |