Detailed information of SNP:
|
SNP ID:
sf0610542790(Gbrowse)
Chromosome: chr06 Position: 10542790 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 89.22% | 10.78% |
| All Indica | 799 | 85.23% | 14.77% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 84.00% | 16.00% |
| Indica II | 213 | 75.59% | 24.41% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610542790 | C->T | LOC_Os06g18110(LOC_Os06g18110.1) | INTRON |