Detailed information of SNP:
|
SNP ID:
sf0610543170(Gbrowse)
Chromosome: chr06 Position: 10543170 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 90.97% | 9.03% |
| All Indica | 789 | 88.09% | 11.91% |
| All Japonica | 496 | 96.98% | 3.02% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 367 | 87.74% | 12.26% |
| Indica II | 211 | 78.67% | 21.33% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610543170 | G->A | LOC_Os06g18110(LOC_Os06g18110.1) | INTRON |