Detailed information of SNP:
|
SNP ID:
sf0610544612(Gbrowse)
Chromosome: chr06 Position: 10544612 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 63.39% | 36.61% |
| All Indica | 788 | 37.06% | 62.94% |
| All Japonica | 494 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 27.54% | 72.46% |
| Indica II | 210 | 38.10% | 61.90% |
| Indica Intermediate | 204 | 53.43% | 46.57% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 91 | 97.80% | 2.20% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610544612 | G->C | LOC_Os06g18110(LOC_Os06g18110.1) | Non-Synonymous SNP |