Detailed information of SNP:
|
SNP ID:
sf0610544863(Gbrowse)
Chromosome: chr06 Position: 10544863 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 89.05% | 10.95% |
| All Indica | 798 | 85.21% | 14.79% |
| All Japonica | 496 | 96.37% | 3.63% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 83.73% | 16.27% |
| Indica II | 213 | 76.06% | 23.94% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 86.02% | 13.98% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610544863 | T->C | LOC_Os06g18110(LOC_Os06g18110.1) | Non-Synonymous SNP |