Detailed information of SNP:
|
SNP ID:
sf0610545082(Gbrowse)
Chromosome: chr06 Position: 10545082 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 88.96% | 11.04% |
| All Indica | 798 | 85.21% | 14.79% |
| All Japonica | 495 | 96.16% | 3.84% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 375 | 83.73% | 16.27% |
| Indica II | 213 | 76.06% | 23.94% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610545082 | A->G | LOC_Os06g18110(LOC_Os06g18110.1) | Non-Synonymous SNP |