Detailed information of SNP:
|
SNP ID:
sf0610546644(Gbrowse)
Chromosome: chr06 Position: 10546644 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 89.04% | 10.96% |
| All Indica | 796 | 85.30% | 14.70% |
| All Japonica | 496 | 96.37% | 3.63% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 374 | 83.96% | 16.04% |
| Indica II | 212 | 75.94% | 24.06% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610546644 | C->T | LOC_Os06g18110(LOC_Os06g18110.1) | Non-Synonymous SNP |