Detailed information of SNP:
|
SNP ID:
sf0610546853(Gbrowse)
Chromosome: chr06 Position: 10546853 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1354 | 52.81% | 47.19% |
| All Indica | 782 | 32.99% | 67.01% |
| All Japonica | 459 | 82.14% | 17.86% |
| Aus | 63 | 79.37% | 20.63% |
| Indica I | 370 | 25.68% | 74.32% |
| Indica II | 210 | 34.76% | 65.24% |
| Indica Intermediate | 202 | 44.55% | 55.45% |
| Temperate Japonica | 314 | 87.58% | 12.42% |
| Tropical Japonica | 83 | 65.06% | 34.94% |
| Japonica Intermediate | 62 | 77.42% | 22.58% |
| Group VI/Aromatic | 11 | 63.64% | 36.36% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610546853 | A->G | LOC_Os06g18110(LOC_Os06g18110.1) | Synonymous |