Detailed information of SNP:
|
SNP ID:
sf0610547088(Gbrowse)
Chromosome: chr06 Position: 10547088 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 89.11% | 10.89% |
| All Indica | 796 | 85.30% | 14.70% |
| All Japonica | 495 | 96.57% | 3.43% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 374 | 83.96% | 16.04% |
| Indica II | 212 | 75.94% | 24.06% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610547088 | G->T | INTERGENIC | None |