Detailed information of SNP:
|
SNP ID:
sf0610547168(Gbrowse)
Chromosome: chr06 Position: 10547168 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 89.05% | 10.95% |
| All Indica | 797 | 85.32% | 14.68% |
| All Japonica | 496 | 96.37% | 3.63% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 374 | 84.22% | 15.78% |
| Indica II | 212 | 75.94% | 24.06% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610547168 | T->C | INTERGENIC | None |