Detailed information of SNP:
|
SNP ID:
sf0610547374(Gbrowse)
Chromosome: chr06 Position: 10547374 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 62.31% | 37.69% |
| All Indica | 790 | 35.95% | 64.05% |
| All Japonica | 496 | 97.98% | 2.02% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 27.01% | 72.99% |
| Indica II | 211 | 37.91% | 62.09% |
| Indica Intermediate | 205 | 50.24% | 49.76% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610547374 | A->C | INTERGENIC | None |