Detailed information of SNP:
|
SNP ID:
sf0610547873(Gbrowse)
Chromosome: chr06 Position: 10547873 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 89.13% | 10.87% |
| All Indica | 797 | 85.32% | 14.68% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 83.96% | 16.04% |
| Indica II | 213 | 76.06% | 23.94% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610547873 | C->T | INTERGENIC | None |