Detailed information of SNP:
|
SNP ID:
sf0610552004(Gbrowse)
Chromosome: chr06 Position: 10552004 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 89.99% | 10.01% |
| All Indica | 788 | 85.28% | 14.72% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 94.89% | 5.11% |
| Indica II | 209 | 89.47% | 10.53% |
| Indica Intermediate | 207 | 63.77% | 36.23% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610552004 | C->T | INTERGENIC | None |