Detailed information of SNP:
|
SNP ID:
sf0610552239(Gbrowse)
Chromosome: chr06 Position: 10552239 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 92.91% | 7.09% |
| All Indica | 792 | 90.15% | 9.85% |
| All Japonica | 495 | 96.57% | 3.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 209 | 94.74% | 5.26% |
| Indica Intermediate | 208 | 70.67% | 29.33% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610552239 | A->T | INTERGENIC | None |