Detailed information of SNP:
|
SNP ID:
sf0610554126(Gbrowse)
Chromosome: chr06 Position: 10554126 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 63.57% | 36.43% |
| All Indica | 799 | 84.73% | 15.27% |
| All Japonica | 497 | 40.44% | 59.56% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 78.40% | 21.60% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 53.73% | 46.27% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610554126 | C->G | LOC_Os06g18140(LOC_Os06g18140.1) | UTR_3_PRIME |