Detailed information of SNP:
|
SNP ID:
sf0610554590(Gbrowse)
Chromosome: chr06 Position: 10554590 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1362 | 66.89% | 33.11% |
| All Indica | 758 | 89.97% | 10.03% |
| All Japonica | 489 | 41.92% | 58.08% |
| Aus | 63 | 0.00% | 100.00% |
| Indica I | 341 | 87.68% | 12.32% |
| Indica II | 210 | 97.14% | 2.86% |
| Indica Intermediate | 207 | 86.47% | 13.53% |
| Temperate Japonica | 335 | 54.33% | 45.67% |
| Tropical Japonica | 86 | 13.95% | 86.05% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610554590 | G->A | INTERGENIC | None |