Detailed information of SNP:
|
SNP ID:
sf0610555005(Gbrowse)
Chromosome: chr06 Position: 10555005 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 61.59% | 38.41% |
| All Indica | 799 | 81.48% | 18.52% |
| All Japonica | 497 | 40.44% | 59.56% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 77.87% | 22.13% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 335 | 54.03% | 45.97% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610555005 | T->C | INTERGENIC | None |