Detailed information of SNP:
|
SNP ID:
sf0610555298(Gbrowse)
Chromosome: chr06 Position: 10555298 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 61.31% | 38.69% |
| All Indica | 788 | 33.50% | 66.50% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 369 | 25.47% | 74.53% |
| Indica II | 213 | 18.78% | 81.22% |
| Indica Intermediate | 206 | 63.11% | 36.89% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610555298 | T->C | INTERGENIC | None |