Detailed information of SNP:
|
SNP ID:
sf0610558878(Gbrowse)
Chromosome: chr06 Position: 10558878 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1248 | 75.88% | 24.12% |
| All Indica | 757 | 74.11% | 25.89% |
| All Japonica | 383 | 79.11% | 20.89% |
| Aus | 59 | 81.36% | 18.64% |
| Indica I | 355 | 77.75% | 22.25% |
| Indica II | 207 | 82.13% | 17.87% |
| Indica Intermediate | 195 | 58.97% | 41.03% |
| Temperate Japonica | 269 | 84.01% | 15.99% |
| Tropical Japonica | 73 | 63.01% | 36.99% |
| Japonica Intermediate | 41 | 75.61% | 24.39% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 37 | 64.86% | 35.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610558878 | A->G | LOC_Os06g18150(LOC_Os06g18150.2) | UTR_3_PRIME |