Detailed information of SNP:
|
SNP ID:
sf0610563320(Gbrowse)
Chromosome: chr06 Position: 10563320 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 58.93% | 41.07% |
| All Indica | 797 | 32.62% | 67.38% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 12.03% | 87.97% |
| Indica II | 213 | 38.97% | 61.03% |
| Indica Intermediate | 210 | 62.86% | 37.14% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610563320 | C->T | INTERGENIC | None |