Detailed information of SNP:
|
SNP ID:
sf0610563654(Gbrowse)
Chromosome: chr06 Position: 10563654 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 81.68% | 18.32% |
| All Indica | 799 | 92.99% | 7.01% |
| All Japonica | 497 | 61.97% | 38.03% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 86.67% | 13.33% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 48.96% | 51.04% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610563654 | A->G | INTERGENIC | None |