Detailed information of SNP:
|
SNP ID:
sf0610563849(Gbrowse)
Chromosome: chr06 Position: 10563849 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 57.69% | 42.31% |
| All Indica | 799 | 28.16% | 71.84% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 23.73% | 76.27% |
| Indica II | 213 | 17.84% | 82.16% |
| Indica Intermediate | 211 | 46.45% | 53.55% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610563849 | G->A | INTERGENIC | None |