Detailed information of SNP:
|
SNP ID:
sf0610565085(Gbrowse)
Chromosome: chr06 Position: 10565085 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 55.79% | 44.21% |
| All Indica | 787 | 25.54% | 74.46% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 10.57% | 89.43% |
| Indica II | 213 | 17.37% | 82.63% |
| Indica Intermediate | 205 | 60.98% | 39.02% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610565085 | C->T | LOC_Os06g18160(LOC_Os06g18160.1) | Non-Synonymous SNP |