Detailed information of SNP:
|
SNP ID:
sf0610565404(Gbrowse)
Chromosome: chr06 Position: 10565404 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1378 | 57.33% | 42.67% |
| All Indica | 763 | 26.21% | 73.79% |
| All Japonica | 493 | 98.17% | 1.83% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 343 | 11.08% | 88.92% |
| Indica II | 210 | 17.14% | 82.86% |
| Indica Intermediate | 210 | 60.00% | 40.00% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 91 | 93.41% | 6.59% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610565404 | G->A | INTERGENIC | None |