Detailed information of SNP:
|
SNP ID:
sf0610566539(Gbrowse)
Chromosome: chr06 Position: 10566539 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 55.15% | 44.85% |
| All Indica | 798 | 24.94% | 75.06% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 9.87% | 90.13% |
| Indica II | 213 | 17.37% | 82.63% |
| Indica Intermediate | 210 | 59.52% | 40.48% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610566539 | C->A | INTERGENIC | None |