Detailed information of SNP:
|
SNP ID:
sf0610572006(Gbrowse)
Chromosome: chr06 Position: 10572006 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 52.89% | 47.11% |
| All Indica | 798 | 87.47% | 12.53% |
| All Japonica | 497 | 6.24% | 93.76% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 210 | 76.19% | 23.81% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610572006 | A->C | INTERGENIC | None |