Detailed information of SNP:
|
SNP ID:
sf0610572056(Gbrowse)
Chromosome: chr06 Position: 10572056 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 55.25% | 44.75% |
| All Indica | 799 | 25.03% | 74.97% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 9.87% | 90.13% |
| Indica II | 213 | 17.84% | 82.16% |
| Indica Intermediate | 211 | 59.24% | 40.76% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610572056 | G->A | INTERGENIC | None |