Detailed information of SNP:
|
SNP ID:
sf0610582859(Gbrowse)
Chromosome: chr06 Position: 10582859 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 59.90% | 40.10% |
| All Indica | 799 | 32.79% | 67.21% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 11.73% | 88.27% |
| Indica II | 213 | 39.44% | 60.56% |
| Indica Intermediate | 211 | 63.51% | 36.49% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610582859 | G->C | INTERGENIC | None |