Detailed information of SNP:
|
SNP ID:
sf0610582956(Gbrowse)
Chromosome: chr06 Position: 10582956 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 52.82% | 47.18% |
| All Indica | 797 | 86.32% | 13.68% |
| All Japonica | 496 | 7.06% | 92.94% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 212 | 86.32% | 13.68% |
| Indica Intermediate | 210 | 78.10% | 21.90% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 67 | 5.97% | 94.03% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610582956 | G->A | INTERGENIC | None |