Detailed information of SNP:
|
SNP ID:
sf0610583105(Gbrowse)
Chromosome: chr06 Position: 10583105 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 55.11% | 44.89% |
| All Indica | 799 | 88.74% | 11.26% |
| All Japonica | 497 | 7.04% | 92.96% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610583105 | C->T | INTERGENIC | None |