Detailed information of SNP:
|
SNP ID:
sf0610583514(Gbrowse)
Chromosome: chr06 Position: 10583514 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 53.30% | 46.70% |
| All Indica | 792 | 22.85% | 77.15% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 372 | 8.60% | 91.40% |
| Indica II | 213 | 17.37% | 82.63% |
| Indica Intermediate | 207 | 54.11% | 45.89% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610583514 | T->C | INTERGENIC | None |