Detailed information of SNP:
|
SNP ID:
sf0610583621(Gbrowse)
Chromosome: chr06 Position: 10583621 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 53.91% | 46.09% |
| All Indica | 785 | 22.80% | 77.20% |
| All Japonica | 496 | 96.37% | 3.63% |
| Aus | 60 | 98.33% | 1.67% |
| Indica I | 373 | 8.85% | 91.15% |
| Indica II | 213 | 16.43% | 83.57% |
| Indica Intermediate | 199 | 55.78% | 44.22% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 86.02% | 13.98% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 57.89% | 42.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610583621 | A->T | INTERGENIC | None |