Detailed information of SNP:
|
SNP ID:
sf0610584047(Gbrowse)
Chromosome: chr06 Position: 10584047 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 55.01% | 44.99% |
| All Indica | 798 | 88.85% | 11.15% |
| All Japonica | 497 | 7.04% | 92.96% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 374 | 93.58% | 6.42% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610584047 | G->A | INTERGENIC | None |