Detailed information of SNP:
|
SNP ID:
sf0610584259(Gbrowse)
Chromosome: chr06 Position: 10584259 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 52.82% | 47.18% |
| All Indica | 799 | 22.15% | 77.85% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 375 | 8.80% | 91.20% |
| Indica II | 213 | 16.90% | 83.10% |
| Indica Intermediate | 211 | 51.18% | 48.82% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610584259 | T->G | INTERGENIC | None |